LOC_Os08g06490.2

Description : Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana (sp|p0c8q5|pp336_arath : 405.0)

Gene families : OG0012974 (Archaeplastida) Phylogenetic Tree(s): OG0012974_tree ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0000692 (SeedPlants) Phylogenetic Tree(s): OG_06_0000692_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g06490.2
Cluster	HCCA: Cluster_167

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01004902001	No alias	Pentatricopeptide repeat-containing protein At4g22760...	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	191	216
IPR002885	Pentatricopeptide_repeat	428	453
IPR002885	Pentatricopeptide_repeat	221	249
IPR002885	Pentatricopeptide_repeat	328	348
IPR002885	Pentatricopeptide_repeat	128	156
IPR002885	Pentatricopeptide_repeat	157	185
IPR002885	Pentatricopeptide_repeat	354	400
IPR002885	Pentatricopeptide_repeat	250	300

External Links

No external refs found!