LOC_Os08g06630.1

Description : basal transcription factor (Sigma)

Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0003010 (LandPlants) Phylogenetic Tree(s): OG_05_0003010_tree ,
OG_06_0004376 (SeedPlants) Phylogenetic Tree(s): OG_06_0004376_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g06630.1
Cluster	HCCA: Cluster_324

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00257610	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00011p00266100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00025p00248060	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00056p00209700	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.07	Archaeplastida
AT1G64860	SIGB, SIG2,...	sigma factor A	0.07	Archaeplastida
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.04	Archaeplastida
AT3G53920	SIGC, SIG3	RNApolymerase sigma-subunit C	0.04	Archaeplastida
AT5G13730	SIGD, SIG4	sigma factor 4	0.02	Archaeplastida
AT5G24120	ATSIG5, SIG5, SIGE	sigma factor E	0.06	Archaeplastida
Cre03.g194950	No alias	RNA biosynthesis.organelle...	0.01	Archaeplastida
GSVIVT01024261001	No alias	RNA biosynthesis.organelle...	0.06	Archaeplastida
GSVIVT01025717001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
GSVIVT01028717001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01032193001	No alias	RNA biosynthesis.organelle...	0.06	Archaeplastida
GSVIVT01035330001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
Gb_03878	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
Gb_37602	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Gb_40730	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
MA_10211749g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10362938g0010	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
MA_10382339g0010	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Mp4g13380.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Mp7g15030.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Pp3c14_22330V3.1	No alias	RNApolymerase sigma subunit 2	0.03	Archaeplastida
Pp3c14_4440V3.1	No alias	sigma factor A	0.02	Archaeplastida
Pp3c22_18520V3.1	No alias	sigma factor E	0.05	Archaeplastida
Pp3c2_5110V3.1	No alias	RNApolymerase sigma subunit 2	0.02	Archaeplastida
Smo117159	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Smo147096	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Solyc03g007370.3.1	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
Solyc06g072710.3.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Solyc08g065970.3.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Solyc09g008040.3.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e001198_P005	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Zm00001e011616_P008	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e021420_P001	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Zm00001e021683_P001	No alias	basal transcription factor (Sigma)	0.08	Archaeplastida
Zm00001e032586_P001	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Zm00001e032596_P002	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e040174_P003	No alias	no hits & (original description: none)	0.16	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Neighborhood
MF	GO:0004096	catalase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006751	glutathione catabolic process	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Neighborhood
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Neighborhood
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
MF	GO:0032977	membrane insertase activity	IEP	Neighborhood
CC	GO:0034357	photosynthetic membrane	IEP	Neighborhood
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Neighborhood
CC	GO:0042651	thylakoid membrane	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0043171	peptide catabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044273	sulfur compound catabolic process	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Neighborhood
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0050993	dimethylallyl diphosphate metabolic process	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0071586	CAAX-box protein processing	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007624	RNA_pol_sigma70_r3	360	431
IPR007630	RNA_pol_sigma70_r4	457	506
IPR007627	RNA_pol_sigma70_r2	283	350

External Links

No external refs found!

LOC_Os08g06630.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation