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  5. LOC_Os08g08700.1

LOC_Os08g08700.1


Description : Polyubiquitin 9 OS=Arabidopsis thaliana (sp|q9fhq6|ubq9_arath : 92.4)


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0065965 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g08700.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT1G11980 RUB3 ubiquitin-related protein 3 0.03 Archaeplastida
AT1G53930 No alias Ubiquitin-like superfamily protein 0.03 Archaeplastida
LOC_Os10g34990.1 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
LOC_Os10g39590.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10426807g0010 No alias ubiquitin-fold protein (UBQ) 0.02 Archaeplastida
Pp3c18_2510V3.1 No alias ubiquitin 4 0.04 Archaeplastida
Pp3c19_8830V3.1 No alias polyubiquitin 10 0.03 Archaeplastida
Pp3c25_6580V3.1 No alias polyubiquitin 10 0.02 Archaeplastida
Pp3c3_26770V3.1 No alias polyubiquitin 10 0.03 Archaeplastida
Smo173723 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo271198 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
No external refs found!