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  5. LOC_Os08g10608.1

LOC_Os08g10608.1


Description : component RPS11 of SSU proteome


Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree ,
OG_06_0002184 (SeedPlants) Phylogenetic Tree(s): OG_06_0002184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g10608.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
AMTR_s00046p00028310 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.27 Archaeplastida
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.09 Archaeplastida
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.27 Archaeplastida
Cpa|evm.model.tig00000551.22 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
Cre12.g514500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
GSVIVT01012877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
GSVIVT01035927001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.31 Archaeplastida
Gb_14912 No alias component RPS11 of SSU proteome 0.1 Archaeplastida
Gb_27579 No alias component RPS11 of SSU proteome 0.06 Archaeplastida
LOC_Os04g42380.1 No alias component RPS11 of SSU proteome 0.06 Archaeplastida
MA_19350g0010 No alias component RPS11 of SSU proteome 0.18 Archaeplastida
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.27 Archaeplastida
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.29 Archaeplastida
Pp3c14_9600V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.22 Archaeplastida
Pp3c1_27980V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.21 Archaeplastida
Pp3c2_13690V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.17 Archaeplastida
Pp3s116_30V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.2 Archaeplastida
Smo268639 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
Solyc06g073790.3.1 No alias component RPS11 of SSU proteome 0.29 Archaeplastida
Solyc06g073800.3.1 No alias component RPS11 of SSU proteome 0.21 Archaeplastida
Solyc12g042080.2.1 No alias component RPS11 of SSU proteome 0.2 Archaeplastida
Zm00001e006955_P001 No alias component RPS11 of SSU proteome 0.37 Archaeplastida
Zm00001e041635_P001 No alias component RPS11 of SSU proteome 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032440 Ribosomal_S11_N 4 72
IPR000266 Ribosomal_S17/S11 74 142
No external refs found!