1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os08g12410.1

LOC_Os08g12410.1


Description : pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0065890 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g12410.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT2G47550 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
GSVIVT01012639001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01027653001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01037352001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.05 Archaeplastida
Gb_24214 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os01g20980.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os01g57854.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os08g34910.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10332149g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10430460g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436266g0010 No alias Pectinesterase 3 OS=Citrus sinensis... 0.02 Archaeplastida
MA_130858g0010 No alias pectin methylesterase 0.02 Archaeplastida
Solyc01g091050.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g099950.1.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e011069_P001 No alias pectin methylesterase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 75 375
No external refs found!