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  5. AMTR_s00009p00179850

AMTR_s00009p00179850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.110

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0003266 (LandPlants) Phylogenetic Tree(s): OG_05_0003266_tree ,
OG_06_0004582 (SeedPlants) Phylogenetic Tree(s): OG_06_0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00179850
Cluster HCCA: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
AT5G22750 RAD5 DNA/RNA helicase protein 0.07 Archaeplastida
LOC_Os04g09800.1 No alias chromatin remodeling factor (Rad5) 0.02 Archaeplastida
Solyc03g005460.4.1 No alias chromatin remodeling factor (Rad5) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000910 cytokinesis IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 961 1038
IPR000330 SNF2_N 429 805
IPR014905 HIRAN 200 302
No external refs found!