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  5. LOC_Os08g17680.1

LOC_Os08g17680.1


Description : component SDF2 of ERdj3B-BiP-SDF2 chaperone complex


Gene families : OG0003267 (Archaeplastida) Phylogenetic Tree(s): OG0003267_tree ,
OG_05_0003564 (LandPlants) Phylogenetic Tree(s): OG_05_0003564_tree ,
OG_06_0004857 (SeedPlants) Phylogenetic Tree(s): OG_06_0004857_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g17680.1
Cluster HCCA: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
AT2G25110 SDF2, AtSDF2, ATSDL stromal cell-derived factor 2-like protein precursor 0.07 Archaeplastida
Cpa|evm.model.tig00000215.14 No alias Stromal cell-derived factor 2-like protein... 0.03 Archaeplastida
Cre13.g571750 No alias Stromal cell-derived factor 2-like protein... 0.07 Archaeplastida
Solyc03g117020.4.1 No alias component SDF2 of ERdj3B-BiP-SDF2 chaperone complex 0.02 Archaeplastida
Zm00001e022473_P002 No alias component SDF2 of ERdj3B-BiP-SDF2 chaperone complex 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR016093 MIR_motif 70 139
No external refs found!