AMTR_s00009p00216420 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.153

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0005281 (LandPlants) Phylogenetic Tree(s): OG_05_0005281_tree ,
OG_06_0004708 (SeedPlants) Phylogenetic Tree(s): OG_06_0004708_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00009p00216420
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
AT1G08060	MOM1, MOM	ATP-dependent helicase family protein	0.08	Archaeplastida
AT2G13370	CHR5	chromatin remodeling 5	0.05	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.07	Archaeplastida
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.05	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.1	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.09	Archaeplastida
Cpa\|evm.model.tig00000217.25	No alias	Chromatin structure-remodeling complex protein SYD...	0.03	Archaeplastida
Cpa\|evm.model.tig00000350.9	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Cpa\|evm.model.tig00000983.26	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Cpa\|evm.model.tig00000989.25	No alias	CHD3-type chromatin-remodeling factor CHR7...	0.01	Archaeplastida
Cpa\|evm.model.tig00020960.24	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.06	Archaeplastida
Cre03.g179300	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
Cre07.g325700	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.06	Archaeplastida
Cre08.g377200	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Cre12.g508150	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
Cre12.g537671	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.05	Archaeplastida
Cre16.g647602	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.08	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.05	Archaeplastida
GSVIVT01017820001	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
GSVIVT01017821001	No alias	No description available	0.07	Archaeplastida
GSVIVT01025216001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01026952001	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
GSVIVT01037235001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.05	Archaeplastida
Gb_01673	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Gb_05671	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Gb_16961	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Gb_35181	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.05	Archaeplastida
LOC_Os02g02290.1	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os06g01320.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os07g31450.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.04	Archaeplastida
MA_10427682g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_10436824g0010	No alias	No annotation	0.04	Archaeplastida
MA_137856g0010	No alias	chromatin remodeling factor (Snf2)	0.07	Archaeplastida
MA_23378g0020	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.02	Archaeplastida
MA_637555g0010	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_8926002g0010	No alias	Chromatin structure-remodeling complex protein SYD...	0.03	Archaeplastida
MA_9572741g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	Archaeplastida
Mp1g17010.1	No alias	chromatin remodeling factor (Snf2)	0.07	Archaeplastida
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Pp3c10_2280V3.1	No alias	chromatin remodeling 4	0.02	Archaeplastida
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.02	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.03	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.03	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Pp3c18_19045V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.05	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.03	Archaeplastida
Pp3c3_23680V3.1	No alias	chromatin remodeling 4	0.03	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.03	Archaeplastida
Pp3c6_10390V3.1	No alias	chromatin remodeling 5	0.03	Archaeplastida
Smo155996	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo177985	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
Smo440558	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.04	Archaeplastida
Smo440815	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Solyc01g094800.4.1	No alias	chromatin remodeling factor (Snf2)	0.07	Archaeplastida
Solyc02g068560.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.08	Archaeplastida
Solyc06g010240.3.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.07	Archaeplastida
Solyc06g065730.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.04	Archaeplastida
Solyc08g029130.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Solyc11g062010.3.1	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Zm00001e030969_P003	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Zm00001e036737_P001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Neighborhood
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
CC	GO:0000228	nuclear chromosome	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0003873	6-phosphofructo-2-kinase activity	IEP	Neighborhood
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0005996	monosaccharide metabolic process	IEP	Neighborhood
BP	GO:0006000	fructose metabolic process	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006606	protein import into nucleus	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0019200	carbohydrate kinase activity	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034504	protein localization to nucleus	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051170	import into nucleus	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
MF	GO:2001070	starch binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	482	515
IPR000330	SNF2_N	1007	1313
IPR001650	Helicase_C	1367	1446
IPR001487	Bromodomain	2009	2059

External Links

No external refs found!

AMTR_s00009p00216420 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation