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  5. AMTR_s00009p00217140

AMTR_s00009p00217140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.154

Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase


Gene families : OG0000845 (Archaeplastida) Phylogenetic Tree(s): OG0000845_tree ,
OG_05_0001102 (LandPlants) Phylogenetic Tree(s): OG_05_0001102_tree ,
OG_06_0001942 (SeedPlants) Phylogenetic Tree(s): OG_06_0001942_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00217140
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AT5G63110 HDA6, RTS1,... histone deacetylase 6 0.02 Archaeplastida
Cre16.g673150 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Gb_07358 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Gb_10850 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Gb_12025 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
MA_10427274g0010 No alias class-I histone deacetylase 0.02 Archaeplastida
Mp1g29190.1 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051205 protein insertion into membrane IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 31 325
No external refs found!