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  5. LOC_Os08g20610.1

LOC_Os08g20610.1


Description : Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana (sp|q9lsl9|pp445_arath : 491.0)


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0001694 (SeedPlants) Phylogenetic Tree(s): OG_06_0001694_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g20610.1

Target Alias Description ECC score Gene Family Method Actions
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01038280001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
Solyc10g081880.3.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 142 188
IPR002885 Pentatricopeptide_repeat 576 621
IPR002885 Pentatricopeptide_repeat 351 399
IPR002885 Pentatricopeptide_repeat 210 259
IPR002885 Pentatricopeptide_repeat 455 504
IPR002885 Pentatricopeptide_repeat 280 329
IPR002885 Pentatricopeptide_repeat 102 133
IPR002885 Pentatricopeptide_repeat 646 670
IPR002885 Pentatricopeptide_repeat 74 92
IPR002885 Pentatricopeptide_repeat 681 709
No external refs found!