LOC_Os08g24760.1

Description : RNA helicase (Prp2)

Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0006093 (LandPlants) Phylogenetic Tree(s): OG_05_0006093_tree ,
OG_06_0005453 (SeedPlants) Phylogenetic Tree(s): OG_06_0005453_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g24760.1
Cluster	HCCA: Cluster_174

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00219890	evm_27.TU.AmTr_v1...	ATP-dependent RNA helicase DEAH12, chloroplastic...	0.02	Archaeplastida
AMTR_s00110p00073830	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.04	Archaeplastida
AT1G26370	No alias	RNA helicase family protein	0.04	Archaeplastida
AT1G27900	No alias	RNA helicase family protein	0.05	Archaeplastida
AT1G32490	ESP3, EMB2733	RNA helicase family protein	0.03	Archaeplastida
AT2G35340	MEE29	helicase domain-containing protein	0.04	Archaeplastida
AT3G26560	No alias	ATP-dependent RNA helicase, putative	0.05	Archaeplastida
AT4G01020	No alias	helicase domain-containing protein / IBR...	0.04	Archaeplastida
AT5G10370	No alias	helicase domain-containing protein / IBR...	0.03	Archaeplastida
AT5G13010	EMB3011	RNA helicase family protein	0.03	Archaeplastida
Cre07.g349100	No alias	RNA processing.RNA splicing.spliceosome...	0.03	Archaeplastida
GSVIVT01007911001	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.05	Archaeplastida
GSVIVT01010362001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
GSVIVT01021163001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
GSVIVT01028153001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Archaeplastida
GSVIVT01029863001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	Archaeplastida
Gb_11931	No alias	RNA helicase (Prp22)	0.03	Archaeplastida
Gb_13411	No alias	RNA helicase (Prp16)	0.03	Archaeplastida
Gb_14270	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
MA_10429675g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10435486g0010	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
MA_277016g0010	No alias	RNA helicase (Prp2)	0.05	Archaeplastida
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Archaeplastida
Mp7g03460.1	No alias	RNA helicase (Prp16)	0.03	Archaeplastida
Pp3c15_1470V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c1_18490V3.1	No alias	RNA helicase family protein	0.06	Archaeplastida
Pp3c1_9270V3.1	No alias	ATP-dependent RNA helicase, putative	0.03	Archaeplastida
Pp3c2_27130V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Solyc03g115390.4.1	No alias	RNA helicase (Prp2)	0.03	Archaeplastida
Solyc10g076910.2.1	No alias	RNA helicase (Prp16)	0.02	Archaeplastida
Zm00001e016478_P002	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	Archaeplastida
Zm00001e022095_P001	No alias	RNA helicase (Prp2)	0.09	Archaeplastida
Zm00001e036358_P005	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
CC	GO:0008023	transcription elongation factor complex	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	614	741
IPR011709	DUF1605	951	1028
IPR007502	Helicase-assoc_dom	803	877

External Links

No external refs found!

LOC_Os08g24760.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation