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  5. LOC_Os08g27150.1

LOC_Os08g27150.1


Description : CRS1 plastidial RNA splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0011370 (LandPlants) Phylogenetic Tree(s): OG_05_0011370_tree ,
OG_06_0011406 (SeedPlants) Phylogenetic Tree(s): OG_06_0011406_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g27150.1
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.03 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.03 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.03 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.04 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.03 Archaeplastida
Pp3c7_23880V3.1 No alias CRM family member 2 0.02 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Smo412905 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Zm00001e041033_P001 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida
Zm00001e041034_P001 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 582 669
IPR001890 RNA-binding_CRM 171 255
IPR001890 RNA-binding_CRM 371 454
No external refs found!