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  5. LOC_Os08g28180.1

LOC_Os08g28180.1


Description : Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana (sp|q0wp85|pp150_arath : 523.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0010490 (SeedPlants) Phylogenetic Tree(s): OG_06_0010490_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g28180.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00263440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
AMTR_s00019p00029790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80880,... 0.03 Archaeplastida
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 Archaeplastida
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 Archaeplastida
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.11 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 Archaeplastida
Gb_12501 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.06 Archaeplastida
LOC_Os02g48122.1 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 Archaeplastida
LOC_Os03g51840.1 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 Archaeplastida
LOC_Os09g37070.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 Archaeplastida
MA_14956g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 Archaeplastida
MA_6218g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.11 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.05 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 427 474
IPR002885 Pentatricopeptide_repeat 205 254
IPR033443 PPR_long 269 413
No external refs found!