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  5. LOC_Os08g33830.1

LOC_Os08g33830.1


Description : PTB-type RNA splicing factor


Gene families : OG0003508 (Archaeplastida) Phylogenetic Tree(s): OG0003508_tree ,
OG_05_0002551 (LandPlants) Phylogenetic Tree(s): OG_05_0002551_tree ,
OG_06_0002602 (SeedPlants) Phylogenetic Tree(s): OG_06_0002602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g33830.1
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Mp7g10030.1 No alias PTB-type RNA splicing factor 0.02 Archaeplastida
Zm00001e001826_P003 No alias PTB-type RNA splicing factor 0.06 Archaeplastida
Zm00001e020441_P003 No alias PTB-type RNA splicing factor 0.02 Archaeplastida
Zm00001e022452_P003 No alias PTB-type RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR021790 DUF3355 242 320
IPR000504 RRM_dom 21 71
No external refs found!