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  5. LOC_Os08g35070.1

LOC_Os08g35070.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0000875 (SeedPlants) Phylogenetic Tree(s): OG_06_0000875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g35070.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00117090 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G25360 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G45460 No alias IBR domain containing protein 0.02 Archaeplastida
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.02 Archaeplastida
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Archaeplastida
LOC_Os09g25220.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
Solyc01g110080.2.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Zm00001e022191_P001 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Zm00001e034155_P001 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 116 168
IPR027370 Znf-RING_LisH 30 79
No external refs found!