LOC_Os08g35420.1

Description : component PsbA/D1 of PS-II reaction center complex

Gene families : OG0001158 (Archaeplastida) Phylogenetic Tree(s): OG0001158_tree ,
OG_05_0000799 (LandPlants) Phylogenetic Tree(s): OG_05_0000799_tree ,
OG_06_0000883 (SeedPlants) Phylogenetic Tree(s): OG_06_0000883_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g35420.1
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
ATCG00020	PSBA	photosystem II reaction center protein A	0.02	Archaeplastida
Gb_03955	No alias	Photosystem II protein D1 OS=Cryptomeria japonica...	0.02	Archaeplastida
Gb_09035	No alias	Photosystem II protein D1 OS=Cryptomeria japonica...	0.02	Archaeplastida
Gb_18604	No alias	Photosystem II protein D1 OS=Adiantum capillus-veneris...	0.02	Archaeplastida
Gb_20129	No alias	Photosystem II protein D1 OS=Zygnema circumcarinatum...	0.03	Archaeplastida
Gb_26289	No alias	no description available(sp\|q85bh5\|psba_antag : 489.0)	0.03	Archaeplastida
LOC_Os04g16770.1	No alias	component PsbA/D1 of PS-II reaction center complex	0.08	Archaeplastida
Solyc02g011990.1.1	No alias	Photosystem II protein D1 OS=Marchantia polymorpha...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0019684	photosynthesis, light reaction	IEA	Interproscan
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEA	Interproscan
BP	GO:0055114	oxidation-reduction process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0015977	carbon fixation	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000484	Photo_RC_L/M	28	327

External Links

No external refs found!

LOC_Os08g35420.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation