LOC_Os08g35490.1

Description : copper cation channel (COPT). copper transporter (COPT)

Gene families : OG0000928 (Archaeplastida) Phylogenetic Tree(s): OG0000928_tree ,
OG_05_0003161 (LandPlants) Phylogenetic Tree(s): OG_05_0003161_tree ,
OG_06_0066253 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g35490.1
Cluster	HCCA: Cluster_208

Target	Alias	Description	ECC score	Gene Family Method
AT2G26975	No alias	Ctr copper transporter family	0.05	Archaeplastida
Gb_28923	No alias	copper cation channel (COPT). copper transporter (COPT)	0.02	Archaeplastida
Mp8g07760.1	No alias	copper cation channel (COPT). copper transporter (COPT)	0.02	Archaeplastida
Smo18456	No alias	Nutrient uptake.copper uptake.reduction-based...	0.03	Archaeplastida
Solyc06g005820.3.1	No alias	copper cation channel (COPT). copper transporter (COPT)	0.04	Archaeplastida
Zm00001e019694_P001	No alias	copper cation channel (COPT). copper transporter (COPT)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005375	copper ion transmembrane transporter activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006825	copper ion transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	cation transmembrane transporter activity	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0034220	ion transmembrane transport	None	Extended
BP	GO:0035434	copper ion transmembrane transport	IEA	Interproscan
CC	GO:0044425	membrane part	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
MF	GO:0046915	transition metal ion transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0098655	cation transmembrane transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098662	inorganic cation transmembrane transport	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007274	Cop_transporter	4	153

External Links

No external refs found!

LOC_Os08g35490.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation