AMTR_s00009p00255970 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.283

Description : Cytoskeleton.microtubular network.alpha-beta-Tubulin heterodimer.beta-Tubulin component

Gene families : OG0000156 (Archaeplastida) Phylogenetic Tree(s): OG0000156_tree ,
OG_05_0000074 (LandPlants) Phylogenetic Tree(s): OG_05_0000074_tree ,
OG_06_0000065 (SeedPlants) Phylogenetic Tree(s): OG_06_0000065_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00009p00255970
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AT1G20010	TUB5	tubulin beta-5 chain	0.05	Archaeplastida
AT1G75780	TUB1	tubulin beta-1 chain	0.06	Archaeplastida
AT2G29550	TUB7	tubulin beta-7 chain	0.03	Archaeplastida
AT5G12250	TUB6	beta-6 tubulin	0.04	Archaeplastida
AT5G23860	TUB8	tubulin beta 8	0.05	Archaeplastida
AT5G44340	TUB4	tubulin beta chain 4	0.03	Archaeplastida
Cre12.g542250	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Cre12.g549550	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
GSVIVT01019758001	No alias	Tubulin beta-4 chain OS=Eleusine indica	0.02	Archaeplastida
GSVIVT01021707001	No alias	Tubulin beta chain (Fragment) OS=Glycine max	0.06	Archaeplastida
GSVIVT01025778001	No alias	Tubulin beta-4 chain OS=Eleusine indica	0.04	Archaeplastida
Gb_15590	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Gb_22609	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Gb_28116	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Gb_29799	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
LOC_Os01g18050.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
LOC_Os01g59150.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
LOC_Os02g07060.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
LOC_Os03g56810.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
MA_10431251g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
MA_230579g0020	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
MA_55439g0010	No alias	Tubulin beta-1 chain OS=Solanum tuberosum...	0.02	Archaeplastida
MA_72744g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
MA_79708g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
MA_8976798g0010	No alias	Tubulin beta-1 chain OS=Zea mays (sp\|p18025\|tbb1_maize : 97.8)	0.02	Archaeplastida
MA_947959g0010	No alias	No annotation	0.02	Archaeplastida
MA_9578301g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Mp1g20730.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Pp3c2_26580V3.1	No alias	tubulin beta chain 2	0.02	Archaeplastida
Pp3c5_20340V3.1	No alias	tubulin beta chain 2	0.02	Archaeplastida
Smo138663	No alias	Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii	0.03	Archaeplastida
Smo164404	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
Smo170592	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
Smo183654	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo402668	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo408201	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Solyc03g025730.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Solyc06g076640.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Solyc10g080940.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
Solyc10g086760.2.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
Zm00001e017421_P002	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.08	Archaeplastida
Zm00001e022571_P001	No alias	Tubulin beta-4 chain OS=Eleusine indica...	0.02	Archaeplastida
Zm00001e025464_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Zm00001e028896_P004	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Zm00001e030351_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e037773_P002	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0006184	obsolete GTP catabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0051258	protein polymerization	IEA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Neighborhood
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
BP	GO:0006544	glycine metabolic process	IEP	Neighborhood
BP	GO:0006563	L-serine metabolic process	IEP	Neighborhood
BP	GO:0009069	serine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Neighborhood
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Neighborhood
BP	GO:0042133	neurotransmitter metabolic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Neighborhood
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003008	Tubulin_FtsZ_GTPase	3	222
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	261	382

External Links

No external refs found!

AMTR_s00009p00255970 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation