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  5. LOC_Os08g40260.1

LOC_Os08g40260.1


Description : transcription factor (SBP)


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0001192 (LandPlants) Phylogenetic Tree(s): OG_05_0001192_tree ,
OG_06_0004431 (SeedPlants) Phylogenetic Tree(s): OG_06_0004431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g40260.1
Cluster HCCA: Cluster_359

Target Alias Description ECC score Gene Family Method Actions
Cre07.g335150 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Cre07.g345050 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
Gb_23724 No alias transcription factor (SBP) 0.05 Archaeplastida
Gb_37539 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os03g61760.1 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_10427464g0010 No alias transcription factor (SBP) 0.02 Archaeplastida
MA_10434066g0020 No alias Squamosa promoter-binding-like protein 15 OS=Oryza... 0.02 Archaeplastida
MA_52027g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
Mp1g13640.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Pp3c17_12760V3.1 No alias squamosa promoter-binding protein-like 12 0.02 Archaeplastida
Pp3c5_22750V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Solyc01g068100.4.1 No alias Squamosa promoter-binding-like protein 1 OS=Arabidopsis... 0.08 Archaeplastida
Solyc05g012040.4.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e006252_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e011712_P002 No alias transcription factor (SBP) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 187 260
No external refs found!