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  5. LOC_Os08g41380.1

LOC_Os08g41380.1


Description : Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana (sp|q94jx6|pp391_arath : 432.0)


Gene families : OG0006886 (Archaeplastida) Phylogenetic Tree(s): OG0006886_tree ,
OG_05_0005211 (LandPlants) Phylogenetic Tree(s): OG_05_0005211_tree ,
OG_06_0004721 (SeedPlants) Phylogenetic Tree(s): OG_06_0004721_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g41380.1
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01026360001 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Neighborhood
CC GO:0000931 gamma-tubulin large complex IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
CC GO:0008274 gamma-tubulin ring complex IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0031503 protein-containing complex localization IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033566 gamma-tubulin complex localization IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034629 cellular protein-containing complex localization IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044450 microtubule organizing center part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 260 285
IPR002885 Pentatricopeptide_repeat 150 180
IPR002885 Pentatricopeptide_repeat 362 405
IPR002885 Pentatricopeptide_repeat 287 336
IPR002885 Pentatricopeptide_repeat 185 230
No external refs found!