LOC_Os08g41810.1

Description : component RPL17 of LSU proteome component

Gene families : OG0001876 (Archaeplastida) Phylogenetic Tree(s): OG0001876_tree ,
OG_05_0001644 (LandPlants) Phylogenetic Tree(s): OG_05_0001644_tree ,
OG_06_0001980 (SeedPlants) Phylogenetic Tree(s): OG_06_0001980_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g41810.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00159640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
AMTR_s00013p00211990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
AMTR_s00013p00223470	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
AMTR_s00013p00224030	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.22	Archaeplastida
AT1G67430	No alias	Ribosomal protein L22p/L17e family protein	0.21	Archaeplastida
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.26	Archaeplastida
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.27	Archaeplastida
GSVIVT01010449001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	Archaeplastida
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	Archaeplastida
MA_10430182g0010	No alias	component RPL17 of LSU proteome component	0.14	Archaeplastida
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.17	Archaeplastida
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.22	Archaeplastida
Pp3c11_5840V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.26	Archaeplastida
Pp3c1_6650V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.14	Archaeplastida
Pp3c2_29840V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.23	Archaeplastida
Pp3c7_25220V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.08	Archaeplastida
Pp3c7_25240V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.24	Archaeplastida
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Solyc03g111230.4.1	No alias	component RPL17 of LSU proteome component	0.09	Archaeplastida
Solyc06g071870.3.1	No alias	component RPL17 of LSU proteome component	0.18	Archaeplastida
Solyc06g071880.4.1	No alias	component RPL17 of LSU proteome component	0.15	Archaeplastida
Zm00001e003661_P001	No alias	component RPL17 of LSU proteome component	0.24	Archaeplastida
Zm00001e005470_P001	No alias	component RPL17 of LSU proteome component	0.03	Archaeplastida
Zm00001e021953_P003	No alias	component RPL17 of LSU proteome component	0.18	Archaeplastida
Zm00001e026882_P002	No alias	component RPL17 of LSU proteome component	0.16	Archaeplastida
Zm00001e031261_P001	No alias	component RPL17 of LSU proteome component	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006448	regulation of translational elongation	IEP	Neighborhood
BP	GO:0006449	regulation of translational termination	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0007021	tubulin complex assembly	IEP	Neighborhood
BP	GO:0007023	post-chaperonin tubulin folding pathway	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Neighborhood
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Neighborhood
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Neighborhood
MF	GO:0043022	ribosome binding	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
BP	GO:0045727	positive regulation of translation	IEP	Neighborhood
BP	GO:0045901	positive regulation of translational elongation	IEP	Neighborhood
BP	GO:0045905	positive regulation of translational termination	IEP	Neighborhood
MF	GO:0048487	beta-tubulin binding	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	38	164

External Links

No external refs found!

LOC_Os08g41810.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation