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  5. LOC_Os08g41960.1

LOC_Os08g41960.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g41960.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00228660 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
AMTR_s00071p00193200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT1G77950 AGL67 AGAMOUS-like 67 0.01 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.02 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.01 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
GSVIVT01001437001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os02g49840.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os04g52410.2 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g11330.1 No alias transcription factor (MADS/AGL) 0.08 Archaeplastida
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_51624g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_758606g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 Archaeplastida
Smo113962 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Smo5961 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Smo69980 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Smo85851 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Solyc02g089200.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc05g015750.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g056620.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc07g055920.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 17 64
No external refs found!