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  5. LOC_Os08g43320.1

LOC_Os08g43320.1


Description : protease (RBL)


Gene families : OG0000617 (Archaeplastida) Phylogenetic Tree(s): OG0000617_tree ,
OG_05_0000454 (LandPlants) Phylogenetic Tree(s): OG_05_0000454_tree ,
OG_06_0000396 (SeedPlants) Phylogenetic Tree(s): OG_06_0000396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g43320.1
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00195850 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
AT1G63120 RBL2, ATRBL2 RHOMBOID-like 2 0.05 Archaeplastida
AT1G77860 KOM Rhomboid-related intramembrane serine protease family protein 0.04 Archaeplastida
GSVIVT01008957001 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
GSVIVT01010602001 No alias Protein degradation.peptidase families.serine-type... 0.02 Archaeplastida
GSVIVT01017301001 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
LOC_Os10g37760.1 No alias protease (RBL) 0.04 Archaeplastida
Pp3c17_14100V3.1 No alias RHOMBOID-like 1 0.03 Archaeplastida
Solyc06g005580.4.1 No alias protease (RBL) 0.03 Archaeplastida
Solyc09g010880.3.1 No alias protease (RBL) 0.01 Archaeplastida
Solyc10g050105.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g013320.2.1 No alias protease (RBL) 0.03 Archaeplastida
Zm00001e007219_P001 No alias protease (RBL) 0.02 Archaeplastida
Zm00001e010203_P002 No alias protease (RBL) 0.02 Archaeplastida
Zm00001e024265_P001 No alias protease (RBL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022764 Peptidase_S54_rhomboid_dom 107 250
No external refs found!