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  5. LOC_Os09g02260.1

LOC_Os09g02260.1


Description : Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana (sp|q9saj5|pp133_arath : 554.0)


Gene families : OG0009632 (Archaeplastida) Phylogenetic Tree(s): OG0009632_tree ,
OG_05_0009626 (LandPlants) Phylogenetic Tree(s): OG_05_0009626_tree ,
OG_06_0007907 (SeedPlants) Phylogenetic Tree(s): OG_06_0007907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g02260.1
Cluster HCCA: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00202120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g79540... 0.03 Archaeplastida
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 Archaeplastida
Zm00001e012678_P001 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.15 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 679 707
IPR002885 Pentatricopeptide_repeat 315 343
IPR002885 Pentatricopeptide_repeat 607 628
IPR002885 Pentatricopeptide_repeat 533 581
IPR002885 Pentatricopeptide_repeat 240 289
IPR002885 Pentatricopeptide_repeat 345 394
IPR002885 Pentatricopeptide_repeat 170 219
IPR002885 Pentatricopeptide_repeat 447 479
IPR002885 Pentatricopeptide_repeat 412 443
No external refs found!