LOC_Os09g02830.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g02830.1
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01037026001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
LOC_Os01g74440.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g22760.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os06g30830.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os09g02780.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os12g21850.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	22	69

External Links

No external refs found!