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  5. LOC_Os09g10960.1

LOC_Os09g10960.1


Description : component MED14 of tail module of MEDIATOR transcription co-activator complex


Gene families : OG0002877 (Archaeplastida) Phylogenetic Tree(s): OG0002877_tree ,
OG_05_0005769 (LandPlants) Phylogenetic Tree(s): OG_05_0005769_tree ,
OG_06_0006985 (SeedPlants) Phylogenetic Tree(s): OG_06_0006985_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g10960.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266990 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
AT3G04740 ATMED14, MED14, SWP RNA polymerase II transcription mediators 0.06 Archaeplastida
Cre03.g190550 No alias No description available 0.01 Archaeplastida
GSVIVT01021781001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Gb_36567 No alias component MED14 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
MA_10435964g0010 No alias component MED14 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
MA_10435964g0030 No alias component MED14 of tail module of MEDIATOR transcription... 0.08 Archaeplastida
Mp8g13300.1 No alias component MED14 of tail module of MEDIATOR transcription... 0.04 Archaeplastida
Pp3c9_4280V3.1 No alias RNA polymerase II transcription mediators 0.03 Archaeplastida
Smo90823 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Solyc01g097320.3.1 No alias component MED14 of tail module of MEDIATOR transcription... 0.06 Archaeplastida
Zm00001e009618_P001 No alias component MED14 of tail module of MEDIATOR transcription... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEA Interproscan
BP GO:0006357 regulation of transcription by RNA polymerase II IEA Interproscan
CC GO:0016592 mediator complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
InterPro domains Description Start Stop
IPR013947 Mediator_Med14 10 210
No external refs found!