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  5. LOC_Os09g11170.1

LOC_Os09g11170.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0000875 (SeedPlants) Phylogenetic Tree(s): OG_06_0000875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g11170.1
Cluster HCCA: Cluster_291

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00116540 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00129p00117090 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
Gb_23736 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
Gb_29625 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 Archaeplastida
MA_10123705g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 Archaeplastida
Pp3c5_8660V3.1 No alias zinc finger (C3HC4-type RING finger) family protein 0.04 Archaeplastida
Smo415256 No alias No description available 0.02 Archaeplastida
Smo48392 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.02 Archaeplastida
Solyc03g117860.3.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
Solyc03g123470.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e022191_P001 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Zm00001e022192_P001 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 282 327
IPR002867 IBR_dom 210 258
No external refs found!