1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g12730.1

LOC_Os09g12730.1


Description : Flowering time control protein FPA OS=Arabidopsis thaliana (sp|q8lpq9|fpa_arath : 121.0)


Gene families : OG0003475 (Archaeplastida) Phylogenetic Tree(s): OG0003475_tree ,
OG_05_0009680 (LandPlants) Phylogenetic Tree(s): OG_05_0009680_tree ,
OG_06_0010450 (SeedPlants) Phylogenetic Tree(s): OG_06_0010450_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g12730.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT4G12640 No alias RNA recognition motif (RRM)-containing protein 0.02 Archaeplastida
Cpa|evm.model.tig00020556.70 No alias Flowering time control protein FPA OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00021532.11 No alias No description available 0.02 Archaeplastida
MA_61973g0010 No alias Flowering time control protein FPA OS=Arabidopsis... 0.02 Archaeplastida
Mp4g06830.1 No alias Flowering time control protein FPA OS=Arabidopsis... 0.03 Archaeplastida
Pp3c11_21890V3.1 No alias RNA binding 0.05 Archaeplastida
Pp3c7_3950V3.1 No alias RNA binding 0.05 Archaeplastida
Solyc12g011050.2.1 No alias Flowering time control protein FPA OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e033753_P002 No alias Flowering time control protein FPA OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012921 SPOC_C 492 606
IPR000504 RRM_dom 51 115
IPR000504 RRM_dom 182 234
No external refs found!