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  5. LOC_Os09g15800.1

LOC_Os09g15800.1


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 942.0)


Gene families : OG0007516 (Archaeplastida) Phylogenetic Tree(s): OG0007516_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g15800.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT4G02750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_15476 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_296059g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_658463g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_74986g0020 No aliasGO:0009057Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc03g119120.3.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Solyc04g039940.3.1 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.06 Archaeplastida
Zm00001e033826_P001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 225 248
IPR002885 Pentatricopeptide_repeat 287 316
IPR002885 Pentatricopeptide_repeat 319 346
IPR002885 Pentatricopeptide_repeat 349 378
IPR002885 Pentatricopeptide_repeat 70 93
IPR002885 Pentatricopeptide_repeat 522 546
IPR002885 Pentatricopeptide_repeat 588 617
IPR002885 Pentatricopeptide_repeat 256 285
IPR002885 Pentatricopeptide_repeat 163 186
IPR002885 Pentatricopeptide_repeat 194 223
IPR002885 Pentatricopeptide_repeat 101 128
IPR002885 Pentatricopeptide_repeat 132 156
IPR002885 Pentatricopeptide_repeat 448 494
IPR032867 DYW_dom 621 745
No external refs found!