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  5. LOC_Os09g17610.1

LOC_Os09g17610.1


Description : no hits & (original description: none)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0002651 (SeedPlants) Phylogenetic Tree(s): OG_06_0002651_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g17610.1

Target Alias Description ECC score Gene Family Method Actions
AT2G15580 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G13228 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT3G58720 No alias RING/U-box superfamily protein 0.01 Archaeplastida
GSVIVT01020765001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_29787 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.01 Archaeplastida
LOC_Os01g16950.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.01 Archaeplastida
LOC_Os03g16480.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g20870.1 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os03g26300.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os03g26420.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g04460.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_408329g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_41001g0010 No alias Probable E3 ubiquitin-protein ligase RHC2A... 0.02 Archaeplastida
Mp5g05250.1 No alias AIP2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Mp7g04520.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g114680.3.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.01 Archaeplastida
Solyc07g055330.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003411_P001 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e009715_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e010857_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038493_P001 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 136 178
No external refs found!