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  5. LOC_Os09g17770.1

LOC_Os09g17770.1


Description : RNA polymerase-IV-positioning factor (SHH). transcription factor (SAWADEE)


Gene families : OG0002006 (Archaeplastida) Phylogenetic Tree(s): OG0002006_tree ,
OG_05_0001458 (LandPlants) Phylogenetic Tree(s): OG_05_0001458_tree ,
OG_06_0001429 (SeedPlants) Phylogenetic Tree(s): OG_06_0001429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g17770.1
Cluster HCCA: Cluster_357

Target Alias Description ECC score Gene Family Method Actions
AT1G15215 No alias BEST Arabidopsis thaliana protein match is:... 0.03 Archaeplastida
MA_10426813g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8542859g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e033896_P001 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 136 262
No external refs found!