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  5. LOC_Os09g23380.1

LOC_Os09g23380.1


Description : component CPSF73-II of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001402 (Archaeplastida) Phylogenetic Tree(s): OG0001402_tree ,
OG_05_0006222 (LandPlants) Phylogenetic Tree(s): OG_05_0006222_tree ,
OG_06_0005354 (SeedPlants) Phylogenetic Tree(s): OG_06_0005354_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g23380.1
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020911.27 No alias Cleavage and polyadenylation specificity factor subunit... 0.02 Archaeplastida
Cre02.g080100 No alias Cleavage and polyadenylation specificity factor subunit... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044599 AP-5 adaptor complex IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 55 195
IPR011108 RMMBL 381 441
IPR022712 Beta_Casp 247 365
No external refs found!