LOC_Os09g24690.1

Description : component RPL34 of LSU proteome component

Gene families : OG0001700 (Archaeplastida) Phylogenetic Tree(s): OG0001700_tree ,
OG_05_0001610 (LandPlants) Phylogenetic Tree(s): OG_05_0001610_tree ,
OG_06_0002125 (SeedPlants) Phylogenetic Tree(s): OG_06_0002125_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g24690.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00260490	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
AMTR_s00010p00260730	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	Archaeplastida
AT1G26880	No alias	Ribosomal protein L34e superfamily protein	0.31	Archaeplastida
AT1G69620	RPL34	ribosomal protein L34	0.29	Archaeplastida
AT3G28900	No alias	Ribosomal protein L34e superfamily protein	0.3	Archaeplastida
Cpa\|evm.model.tig00000632.3	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Cre16.g661050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	Archaeplastida
GSVIVT01011419001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
GSVIVT01019985001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	Archaeplastida
Gb_36060	No alias	component RPL34 of LSU proteome component	0.1	Archaeplastida
MA_109553g0010	No alias	component RPL34 of LSU proteome component	0.22	Archaeplastida
MA_175574g0010	No alias	component RPL34 of LSU proteome component	0.16	Archaeplastida
MA_7581523g0010	No alias	component RPL34 of LSU proteome component	0.21	Archaeplastida
Mp4g17040.1	No alias	component RPL34 of LSU proteome component	0.32	Archaeplastida
Pp3c11_2940V3.1	No alias	Ribosomal protein L34e superfamily protein	0.23	Archaeplastida
Pp3c11_3090V3.1	No alias	Ribosomal protein L34e superfamily protein	0.05	Archaeplastida
Pp3c1_1800V3.1	No alias	Ribosomal protein L34e superfamily protein	0.19	Archaeplastida
Pp3c25_11980V3.1	No alias	Ribosomal protein L34e superfamily protein	0.24	Archaeplastida
Pp3c2_34570V3.1	No alias	Ribosomal protein L34e superfamily protein	0.13	Archaeplastida
Pp3c7_21380V3.1	No alias	Ribosomal protein L34e superfamily protein	0.2	Archaeplastida
Smo113433	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Solyc05g007560.3.1	No alias	component RPL34 of LSU proteome component	0.32	Archaeplastida
Solyc06g069860.4.1	No alias	component RPL34 of LSU proteome component	0.35	Archaeplastida
Zm00001e004116_P001	No alias	component RPL34 of LSU proteome component	0.3	Archaeplastida
Zm00001e021733_P002	No alias	component RPL34 of LSU proteome component	0.38	Archaeplastida
Zm00001e034114_P001	No alias	component RPL34 of LSU proteome component	0.35	Archaeplastida
Zm00001e040229_P001	No alias	component RPL34 of LSU proteome component	0.35	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006066	alcohol metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006547	histidine metabolic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0046164	alcohol catabolic process	IEP	Neighborhood
BP	GO:0046174	polyol catabolic process	IEP	Neighborhood
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Neighborhood
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Neighborhood
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0071545	inositol phosphate catabolic process	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008195	Ribosomal_L34Ae	1	96

External Links

No external refs found!

LOC_Os09g24690.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation