1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g25050.1

LOC_Os09g25050.1


Description : Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana (sp|q9flj4|pp440_arath : 347.0)


Gene families : OG0014000 (Archaeplastida) Phylogenetic Tree(s): OG0014000_tree ,
OG_05_0015257 (LandPlants) Phylogenetic Tree(s): OG_05_0015257_tree ,
OG_06_0016658 (SeedPlants) Phylogenetic Tree(s): OG_06_0016658_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g25050.1
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
Zm00001e034100_P001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 141 168
IPR002885 Pentatricopeptide_repeat 482 510
IPR002885 Pentatricopeptide_repeat 378 409
IPR002885 Pentatricopeptide_repeat 241 290
IPR002885 Pentatricopeptide_repeat 311 360
IPR002885 Pentatricopeptide_repeat 528 575
IPR002885 Pentatricopeptide_repeat 171 219
IPR002885 Pentatricopeptide_repeat 416 462
No external refs found!