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  5. LOC_Os09g25200.1

LOC_Os09g25200.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0002645 (LandPlants) Phylogenetic Tree(s): OG_05_0002645_tree ,
OG_06_0070347 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g25200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00116540 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G45490 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.05 Archaeplastida
MA_10432733g0010 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 167 216
No external refs found!