LOC_Os09g28200.1

Description : transcription factor (HSF)

Gene families : OG0000090 (Archaeplastida) Phylogenetic Tree(s): OG0000090_tree ,
OG_05_0000053 (LandPlants) Phylogenetic Tree(s): OG_05_0000053_tree ,
OG_06_0000104 (SeedPlants) Phylogenetic Tree(s): OG_06_0000104_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g28200.1
Cluster	HCCA: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00068180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.06	Archaeplastida
AMTR_s00073p00033500	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.09	Archaeplastida
AMTR_s00095p00016160	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.02	Archaeplastida
AT1G46264	HSFB4, SCZ, AT-HSFB4	heat shock transcription factor B4	0.03	Archaeplastida
AT3G02990	HSFA1E, ATHSFA1E	heat shock transcription factor A1E	0.02	Archaeplastida
AT3G22830	AT-HSFA6B, HSFA6B	heat shock transcription factor A6B	0.06	Archaeplastida
GSVIVT01009477001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
GSVIVT01037333001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
LOC_Os01g43590.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
MA_10428298g0010	No alias	transcription factor (HSF)	0.02	Archaeplastida
MA_113508g0010	No alias	transcription factor (HSF)	0.03	Archaeplastida
MA_13910g0010	No alias	transcription factor (HSF)	0.03	Archaeplastida
MA_91466g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_9434330g0010	No alias	transcription factor (HSF)	0.02	Archaeplastida
Pp3c18_9360V3.1	No alias	heat shock transcription factor B4	0.04	Archaeplastida
Pp3c7_4270V3.1	No alias	heat shock transcription factor B4	0.02	Archaeplastida
Solyc02g072060.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc04g078770.4.1	No alias	transcription factor (HSF)	0.05	Archaeplastida
Solyc11g064990.2.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc12g007070.2.1	No alias	transcription factor (HSF)	0.02	Archaeplastida
Zm00001e009909_P001	No alias	transcription factor (HSF)	0.04	Archaeplastida
Zm00001e009944_P001	No alias	transcription factor (HSF)	0.02	Archaeplastida
Zm00001e034336_P001	No alias	transcription factor (HSF)	0.05	Archaeplastida
Zm00001e035680_P002	No alias	transcription factor (HSF)	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
CC	GO:0044217	other organism part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	25	115

External Links

No external refs found!

LOC_Os09g28200.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation