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  5. LOC_Os09g31019.1

LOC_Os09g31019.1


Description : component RPL40 of LSU proteome component


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g31019.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
MA_57988g0010 No alias ubiquitin-fold protein (UBQ) 0.02 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.02 Archaeplastida
Smo93613 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 85 132
IPR000626 Ubiquitin_dom 3 74
No external refs found!