LOC_Os09g32300.1

Description : KH domain-containing protein HEN4 OS=Arabidopsis thaliana (sp|f4kdn0|hen4_arath : 160.0)

Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0002279 (SeedPlants) Phylogenetic Tree(s): OG_06_0002279_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g32300.1
Cluster	HCCA: Cluster_293

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00265700	evm_27.TU.AmTr_v1...	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
AMTR_s00019p00253900	evm_27.TU.AmTr_v1...	KH domain-containing protein HEN4 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00092p00116010	evm_27.TU.AmTr_v1...	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01009261001	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
GSVIVT01021523001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01038571001	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Gb_31686	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Gb_38220	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
LOC_Os08g10030.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.01	Archaeplastida
MA_10430861g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.02	Archaeplastida
MA_108374g0010	No alias	KH domain-containing protein HEN4 OS=Arabidopsis...	0.02	Archaeplastida
MA_3715g0020	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
MA_6622g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.02	Archaeplastida
MA_71572g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g04880.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Solyc01g106020.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Solyc02g067210.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
Solyc03g034200.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.06	Archaeplastida
Solyc03g082980.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Solyc04g077060.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Solyc08g048500.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e001825_P001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e026127_P004	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
Zm00001e030716_P002	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
Zm00001e039986_P003	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Neighborhood
BP	GO:0000272	polysaccharide catabolic process	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005849	mRNA cleavage factor complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006378	mRNA polyadenylation	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016160	amylase activity	IEP	Neighborhood
MF	GO:0016161	beta-amylase activity	IEP	Neighborhood
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0030695	GTPase regulator activity	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0031124	mRNA 3'-end processing	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
CC	GO:0035658	Mon1-Ccz1 complex	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0043631	RNA polyadenylation	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901567	fatty acid derivative binding	IEP	Neighborhood
MF	GO:1901681	sulfur compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	544	606
IPR004088	KH_dom_type_1	112	178
IPR004088	KH_dom_type_1	246	295
IPR004088	KH_dom_type_1	329	396

External Links

No external refs found!

LOC_Os09g32300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation