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LOC_Os09g34910.1


Description : DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica (sp|q650t9|rh7_orysj : 1041.0)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0003428 (LandPlants) Phylogenetic Tree(s): OG_05_0003428_tree ,
OG_06_0003705 (SeedPlants) Phylogenetic Tree(s): OG_06_0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g34910.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020734.25 No alias DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.01 Archaeplastida
Cre02.g118300 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 Archaeplastida
Cre17.g727700 No alias DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.05 Archaeplastida
Pp3c27_1440V3.1 No alias DEAD box RNA helicase (RH3) 0.02 Archaeplastida
Smo99603 No alias DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 Archaeplastida
Solyc06g035450.4.1 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia... 0.06 Archaeplastida
Solyc07g044760.3.1 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e010187_P002 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e034728_P002 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012562 GUCT 550 645
IPR011545 DEAD/DEAH_box_helicase_dom 139 317
IPR001650 Helicase_C 360 460
No external refs found!