LOC_Os09g35910.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g35910.1
Cluster	HCCA: Cluster_183

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00215130	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00059p00141510	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AT2G46680	HB-7, ATHB-7, ATHB7	homeobox 7	0.02	Archaeplastida
AT3G01220	ATHB20, HB20	homeobox protein 20	0.05	Archaeplastida
AT3G01470	ATHB1, ATHB-1,...	homeobox 1	0.03	Archaeplastida
AT3G61890	HB-12, ATHB-12, ATHB12	homeobox 12	0.06	Archaeplastida
AT4G36740	ATHB40, HB40, HB-5	homeobox protein 40	0.04	Archaeplastida
AT5G15150	ATHB3, HB-3, ATHB-3, HAT7	homeobox 3	0.04	Archaeplastida
AT5G53980	ATHB52, HB52	homeobox protein 52	0.03	Archaeplastida
GSVIVT01003431001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01019655001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01020033001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Gb_04698	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Gb_20878	No alias	transcription factor (HD-ZIP I/II)	0.06	Archaeplastida
LOC_Os03g10210.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os07g39320.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os10g23090.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
LOC_Os10g26500.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
MA_10428916g0010	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
MA_19453g0050	No alias	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis...	0.04	Archaeplastida
MA_9241385g0010	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Mp3g02320.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Pp3c11_23440V3.1	No alias	homeobox 1	0.04	Archaeplastida
Pp3c14_21680V3.1	No alias	homeobox 3	0.02	Archaeplastida
Pp3c17_18190V3.1	No alias	homeobox protein 16	0.04	Archaeplastida
Pp3c1_37070V3.1	No alias	homeobox protein 16	0.04	Archaeplastida
Pp3c25_13450V3.1	No alias	homeobox 1	0.02	Archaeplastida
Pp3c2_4940V3.1	No alias	Homeobox-leucine zipper protein family	0.03	Archaeplastida
Pp3c6_2730V3.1	No alias	Homeobox-leucine zipper protein family	0.05	Archaeplastida
Pp3c7_2100V3.1	No alias	Homeobox-leucine zipper protein family	0.03	Archaeplastida
Smo81609	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Solyc01g010600.4.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc01g096320.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc02g067410.2.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Solyc02g087840.3.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Solyc03g034130.4.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Solyc03g113270.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc04g074700.4.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc05g051460.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc06g053220.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e004824_P001	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Zm00001e010004_P002	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e015717_P003	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e022379_P002	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Zm00001e023458_P003	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e034785_P001	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004556	alpha-amylase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016160	amylase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	31	83
IPR003106	Leu_zip_homeo	85	127

External Links

No external refs found!

LOC_Os09g35910.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation