AMTR_s00010p00148880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.106

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0001710 (Archaeplastida) Phylogenetic Tree(s): OG0001710_tree ,
OG_05_0001098 (LandPlants) Phylogenetic Tree(s): OG_05_0001098_tree ,
OG_06_0001138 (SeedPlants) Phylogenetic Tree(s): OG_06_0001138_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00148880
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AT3G03450 RGL2 RGA-like 2 0.03 Archaeplastida
GSVIVT01011710001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.03 Archaeplastida
LOC_Os01g45860.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.03 Archaeplastida
Mp8g03980.1 No alias transcription factor (GRAS) 0.03 Archaeplastida
Zm00001e005412_P001 No alias DELLA-type gibberellin signal transducer. transcription... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR021914 TF_DELLA_N 31 99
IPR005202 TF_GRAS 191 552
No external refs found!