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  5. LOC_Os09g38020.1

LOC_Os09g38020.1


Description : histone (H4)


Gene families : OG0000170 (Archaeplastida) Phylogenetic Tree(s): OG0000170_tree ,
OG_05_0000135 (LandPlants) Phylogenetic Tree(s): OG_05_0000135_tree ,
OG_06_0000106 (SeedPlants) Phylogenetic Tree(s): OG_06_0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g38020.1
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271490 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
AMTR_s00003p00201000 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H4-type histone 0.11 Archaeplastida
AMTR_s00019p00220160 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
AT1G07820 No alias Histone superfamily protein 0.1 Archaeplastida
AT2G28740 HIS4 histone H4 0.09 Archaeplastida
AT3G45930 No alias Histone superfamily protein 0.14 Archaeplastida
AT3G46320 No alias Histone superfamily protein 0.11 Archaeplastida
AT3G53730 No alias Histone superfamily protein 0.12 Archaeplastida
AT5G59690 No alias Histone superfamily protein 0.08 Archaeplastida
AT5G59970 No alias Histone superfamily protein 0.1 Archaeplastida
Cre06.g264600 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g265050 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g265200 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g265450 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g266600 No alias Chromatin organisation.histones.H4-type histone 0.11 Archaeplastida
Cre06.g268000 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g268400 No alias Chromatin organisation.histones.H4-type histone 0.09 Archaeplastida
Cre06.g271300 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g274150 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g274300 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g274900 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g275700 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g276650 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre06.g276800 No alias Chromatin organisation.histones.H4-type histone 0.09 Archaeplastida
Cre12.g504600 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre12.g504850 No alias Chromatin organisation.histones.H4-type histone 0.12 Archaeplastida
Cre12.g505450 No alias Chromatin organisation.histones.H4-type histone 0.11 Archaeplastida
Cre12.g506350 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre12.g506450 No alias Chromatin organisation.histones.H4-type histone 0.11 Archaeplastida
Cre17.g708200 No alias Chromatin organisation.histones.H4-type histone 0.02 Archaeplastida
Cre17.g708650 No alias Chromatin organisation.histones.H4-type histone 0.1 Archaeplastida
Cre17.g709100 No alias Chromatin organisation.histones.H4-type histone 0.09 Archaeplastida
GSVIVT01016576001 No alias Chromatin organisation.histones.H4-type histone 0.03 Archaeplastida
GSVIVT01016577001 No alias Chromatin organisation.histones.H4-type histone 0.05 Archaeplastida
GSVIVT01016578001 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
GSVIVT01025005001 No alias Chromatin organisation.histones.H4-type histone 0.05 Archaeplastida
GSVIVT01032631001 No alias Chromatin organisation.histones.H4-type histone 0.07 Archaeplastida
GSVIVT01034208001 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Gb_10373 No alias histone (H4) 0.1 Archaeplastida
Gb_10374 No alias histone (H4) 0.08 Archaeplastida
Gb_15454 No alias histone (H4) 0.05 Archaeplastida
Gb_15455 No alias histone (H4) 0.04 Archaeplastida
Gb_15458 No alias histone (H4) 0.11 Archaeplastida
Gb_15459 No alias histone (H4) 0.03 Archaeplastida
Gb_20453 No alias histone (H4) 0.07 Archaeplastida
Gb_21914 No alias histone (H4) 0.11 Archaeplastida
Gb_21918 No alias histone (H4) 0.08 Archaeplastida
Gb_25031 No alias histone (H4) 0.06 Archaeplastida
Gb_28215 No alias histone (H4) 0.03 Archaeplastida
MA_10427181g0010 No alias histone (H4) 0.05 Archaeplastida
MA_10433778g0010 No alias histone (H4) 0.08 Archaeplastida
MA_116904g0010 No alias histone (H4) 0.11 Archaeplastida
MA_141877g0030 No alias histone (H4) 0.06 Archaeplastida
MA_234535g0010 No alias histone (H4) 0.05 Archaeplastida
MA_38882g0010 No alias histone (H4) 0.02 Archaeplastida
MA_465285g0010 No alias histone (H4) 0.09 Archaeplastida
MA_713159g0010 No alias histone (H4) 0.11 Archaeplastida
MA_73436g0010 No alias histone (H4) 0.03 Archaeplastida
MA_74102g0010 No alias histone (H4) 0.09 Archaeplastida
MA_7644388g0010 No alias histone (H4) 0.02 Archaeplastida
MA_83574g0010 No alias histone (H4) 0.04 Archaeplastida
MA_89764g0010 No alias histone (H4) 0.03 Archaeplastida
MA_9266178g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_97951g0010 No alias histone (H4) 0.03 Archaeplastida
Mp4g03080.1 No alias histone (H4) 0.04 Archaeplastida
Mp4g03090.1 No alias histone (H4) 0.04 Archaeplastida
Mp4g13430.1 No alias histone (H4) 0.04 Archaeplastida
Mp4g13440.1 No alias histone (H4) 0.04 Archaeplastida
Mp5g16840.1 No alias histone (H4) 0.05 Archaeplastida
Mp5g22460.1 No alias histone (H4) 0.02 Archaeplastida
Mp5g22470.1 No alias histone (H4) 0.02 Archaeplastida
Pp3c13_5310V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c22_22340V3.1 No alias histone H4 0.08 Archaeplastida
Pp3c4_22160V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c7_22150V3.1 No alias histone H4 0.03 Archaeplastida
Smo150847 No alias Chromatin organisation.histones.H4-type histone 0.02 Archaeplastida
Smo167497 No alias Chromatin organisation.histones.H4-type histone 0.02 Archaeplastida
Smo233579 No alias Chromatin organisation.histones.H4-type histone 0.03 Archaeplastida
Solyc04g011390.1.1 No alias histone (H4) 0.15 Archaeplastida
Solyc05g054610.1.1 No alias histone (H4) 0.14 Archaeplastida
Solyc06g005420.1.1 No alias histone (H4) 0.17 Archaeplastida
Solyc06g005430.1.1 No alias histone (H4) 0.1 Archaeplastida
Solyc06g072240.1.1 No alias histone (H4) 0.09 Archaeplastida
Solyc06g075830.2.1 No alias histone (H4) 0.19 Archaeplastida
Solyc06g075850.1.1 No alias histone (H4) 0.06 Archaeplastida
Solyc06g075930.1.1 No alias histone (H4) 0.09 Archaeplastida
Solyc06g075960.1.1 No alias histone (H4) 0.11 Archaeplastida
Solyc11g066160.1.1 No alias histone (H4) 0.18 Archaeplastida
Solyc11g072840.1.1 No alias histone (H4) 0.1 Archaeplastida
Solyc11g072860.2.1 No alias histone (H4) 0.13 Archaeplastida
Zm00001e007138_P001 No alias histone (H4) 0.09 Archaeplastida
Zm00001e009859_P001 No alias histone (H4) 0.08 Archaeplastida
Zm00001e016816_P001 No alias histone (H4) 0.08 Archaeplastida
Zm00001e019368_P001 No alias histone (H4) 0.07 Archaeplastida
Zm00001e023245_P001 No alias histone (H4) 0.15 Archaeplastida
Zm00001e025845_P001 No alias histone (H4) 0.09 Archaeplastida
Zm00001e027269_P001 No alias histone (H4) 0.06 Archaeplastida
Zm00001e034229_P001 No alias histone (H4) 0.05 Archaeplastida
Zm00001e034230_P001 No alias histone (H4) 0.11 Archaeplastida
Zm00001e034964_P001 No alias histone (H4) 0.11 Archaeplastida
Zm00001e041377_P001 No alias histone (H4) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR035425 CENP-T/H4_C 36 96
No external refs found!