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  5. LOC_Os09g39540.1

LOC_Os09g39540.1


Description : component RPS25 of SSU proteome


Gene families : OG0002355 (Archaeplastida) Phylogenetic Tree(s): OG0002355_tree ,
OG_05_0002220 (LandPlants) Phylogenetic Tree(s): OG_05_0002220_tree ,
OG_06_0002447 (SeedPlants) Phylogenetic Tree(s): OG_06_0002447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g39540.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00198170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AMTR_s00031p00169220 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
AT2G21580 No alias Ribosomal protein S25 family protein 0.38 Archaeplastida
AT4G34555 No alias Ribosomal protein S25 family protein 0.29 Archaeplastida
AT4G39200 No alias Ribosomal protein S25 family protein 0.32 Archaeplastida
Cpa|evm.model.tig00000037.5 No alias 40S ribosomal protein S25-4 OS=Arabidopsis thaliana 0.12 Archaeplastida
Cre08.g382500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.38 Archaeplastida
GSVIVT01000974001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 Archaeplastida
GSVIVT01010721001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 Archaeplastida
GSVIVT01023806001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
Gb_01693 No alias component RPS25 of SSU proteome 0.22 Archaeplastida
Gb_29693 No alias component RPS25 of SSU proteome 0.26 Archaeplastida
MA_104137g0010 No alias component RPS25 of SSU proteome 0.27 Archaeplastida
MA_10430279g0010 No alias component RPS25 of SSU proteome 0.31 Archaeplastida
Mp4g06120.1 No alias component RPS25 of SSU proteome 0.39 Archaeplastida
Pp3c14_13580V3.1 No alias Ribosomal protein S25 family protein 0.36 Archaeplastida
Pp3c17_4670V3.1 No alias Ribosomal protein S25 family protein 0.42 Archaeplastida
Pp3c1_25330V3.1 No alias Ribosomal protein S25 family protein 0.29 Archaeplastida
Pp3c2_14800V3.1 No alias Ribosomal protein S25 family protein 0.05 Archaeplastida
Smo172404 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
Solyc02g069850.3.1 No alias component RPS25 of SSU proteome 0.17 Archaeplastida
Zm00001e003921_P001 No alias component RPS25 of SSU proteome 0.39 Archaeplastida
Zm00001e019589_P001 No alias component RPS25 of SSU proteome 0.43 Archaeplastida
Zm00001e028930_P001 No alias component RPS25 of SSU proteome 0.26 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 9 105
No external refs found!