LOC_Os10g03540.1


Description : protein factor NHP2L1/SNU13 of U4/U6 small nuclear ribonucleoprotein particle (snRNP). component Snu13 of snoRNP rRNA methylation complex


Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0004101 (LandPlants) Phylogenetic Tree(s): OG_05_0004101_tree ,
OG_06_0004972 (SeedPlants) Phylogenetic Tree(s): OG_06_0004972_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g03540.1
Cluster HCCA: Cluster_300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00189790 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
AT4G12600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Archaeplastida
AT4G22380 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Archaeplastida
AT5G08180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Archaeplastida
AT5G20160 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Archaeplastida
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.07 Archaeplastida
Cre16.g690500 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
GSVIVT01015520001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.06 Archaeplastida
LOC_Os06g16290.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
MA_141850g0010 No alias No annotation 0.04 Archaeplastida
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 Archaeplastida
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 Archaeplastida
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
Pp3c15_25080V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Archaeplastida
Pp3c17_18010V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Archaeplastida
Pp3c17_18050V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Archaeplastida
Pp3c9_25980V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Archaeplastida
Solyc12g038980.2.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.07 Archaeplastida
Zm00001e001004_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
Zm00001e038611_P002 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030150 protein import into mitochondrial matrix IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 18 109
No external refs found!