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  5. LOC_Os10g06540.1

LOC_Os10g06540.1


Description : VAMP7-type R-type SNARE longin protein


Gene families : OG0000293 (Archaeplastida) Phylogenetic Tree(s): OG0000293_tree ,
OG_05_0006389 (LandPlants) Phylogenetic Tree(s): OG_05_0006389_tree ,
OG_06_0009833 (SeedPlants) Phylogenetic Tree(s): OG_06_0009833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g06540.1
Cluster HCCA: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
Cre06.g278172 No alias Vesicle trafficking.SNARE target membrane recognition... 0.01 Archaeplastida
MA_11045g0010 No alias VAMP7-type R-type SNARE longin protein 0.02 Archaeplastida
MA_85409g0010 No alias VAMP7-type R-type SNARE longin protein 0.02 Archaeplastida
Mp7g07410.1 No alias VAMP7-type R-type SNARE longin protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0072546 ER membrane protein complex IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR010908 Longin_dom 29 114
IPR001388 Synaptobrevin 130 217
No external refs found!