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  5. LOC_Os10g08580.1

LOC_Os10g08580.1


Description : class II photolyase (PHR1)


Gene families : OG0003913 (Archaeplastida) Phylogenetic Tree(s): OG0003913_tree ,
OG_05_0007541 (LandPlants) Phylogenetic Tree(s): OG_05_0007541_tree ,
OG_06_0009448 (SeedPlants) Phylogenetic Tree(s): OG_06_0009448_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g08580.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G12370 UVR2, PHR1 photolyase 1 0.03 Archaeplastida
Pp3c5_3400V3.1 No alias photolyase 1 0.01 Archaeplastida
Zm00001e002704_P005 No alias class II photolyase (PHR1) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 40 207
No external refs found!