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  5. LOC_Os10g22700.1

LOC_Os10g22700.1


Description : AAA-ATPase At3g50940 OS=Arabidopsis thaliana (sp|q147f9|aatpc_arath : 142.0)


Gene families : OG0000095 (Archaeplastida) Phylogenetic Tree(s): OG0000095_tree ,
OG_05_0007879 (LandPlants) Phylogenetic Tree(s): OG_05_0007879_tree ,
OG_06_0005074 (SeedPlants) Phylogenetic Tree(s): OG_06_0005074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g22700.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G28600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
AT3G28610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
AT5G40000 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
GSVIVT01010357001 No alias Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os12g24320.1 No alias AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10426157g0010 No alias AAA-ATPase At4g25835 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10435468g0020 No alias AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_216982g0010 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_749877g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g055810.1.1 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e007733_P001 No alias AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e011416_P001 No alias AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027961_P001 No alias AAA-ATPase At3g50940 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e033043_P001 No alias AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e035111_P001 No alias Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e038158_P001 No alias AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 119 175
No external refs found!