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  5. LOC_Os10g25200.1

LOC_Os10g25200.1


Description : component SPT20/ADA5 of SAGA transcription co-activator complex


Gene families : OG0005278 (Archaeplastida) Phylogenetic Tree(s): OG0005278_tree ,
OG_05_0005424 (LandPlants) Phylogenetic Tree(s): OG_05_0005424_tree ,
OG_06_0008278 (SeedPlants) Phylogenetic Tree(s): OG_06_0008278_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g25200.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G72390 No alias CONTAINS InterPro DOMAIN/s: Spt20 family... 0.09 Archaeplastida
Cpa|evm.model.tig00021127.5 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
GSVIVT01016716001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.1 Archaeplastida
MA_10436298g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.04 Archaeplastida
MA_10436398g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_114383g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 Archaeplastida
Mp2g19910.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.04 Archaeplastida
Pp3c13_8340V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c3_3510V3.1 No alias No annotation 0.05 Archaeplastida
Solyc06g063010.4.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.05 Archaeplastida
Zm00001e024750_P001 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!