LOC_Os10g29560.1


Description : component MPE1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001557 (Archaeplastida) Phylogenetic Tree(s): OG0001557_tree ,
OG_05_0004108 (LandPlants) Phylogenetic Tree(s): OG_05_0004108_tree ,
OG_06_0006606 (SeedPlants) Phylogenetic Tree(s): OG_06_0006606_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g29560.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Cre12.g543303 No alias No description available 0.02 Archaeplastida
Gb_27645 No alias component MPE1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
MA_10554g0010 No alias component MPE1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Mp2g17650.1 No alias component MPE1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Zm00001e004737_P002 No alias component MPE1 of Cleavage and Polyadenylation... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR014891 DWNN_domain 3 76
IPR025829 Zn_knuckle_CX2CX3GHX4C 206 226
No external refs found!