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  5. AMTR_s00010p00236880

AMTR_s00010p00236880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.287

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor


Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00236880
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00236050 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 Archaeplastida
AMTR_s00010p00237380 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00010p00255890 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 Archaeplastida
AMTR_s00060p00059830 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00126p00036100 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AT5G54180 PTAC15 plastid transcriptionally active 15 0.03 Archaeplastida
Cpa|evm.model.tig00001304.7 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
GSVIVT01022213001 No alias RNA biosynthesis.organelle... 0.17 Archaeplastida
GSVIVT01028380001 No alias RNA biosynthesis.organelle... 0.06 Archaeplastida
GSVIVT01036787001 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
Gb_07257 No alias TAC15 cofactor of plastid-encoded RNA polymerase.... 0.02 Archaeplastida
Gb_15878 No alias transcription factor (mTERF) 0.06 Archaeplastida
Gb_26175 No alias transcription factor (mTERF) 0.06 Archaeplastida
Gb_26176 No alias transcription factor (mTERF) 0.02 Archaeplastida
LOC_Os02g51450.2 No alias transcription factor (mTERF) 0.05 Archaeplastida
LOC_Os04g54510.1 No alias transcription factor (mTERF) 0.05 Archaeplastida
LOC_Os05g33460.2 No alias transcription factor (mTERF) 0.04 Archaeplastida
LOC_Os05g34160.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
LOC_Os06g12070.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
LOC_Os11g14130.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_192398g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_493420g0010 No alias transcription factor (mTERF) 0.14 Archaeplastida
MA_7539255g0010 No alias no hits & (original description: none) 0.12 Archaeplastida
MA_81581g0010 No alias transcription factor (mTERF) 0.06 Archaeplastida
MA_92135g0010 No alias transcription factor (mTERF) 0.08 Archaeplastida
Smo77318 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
Solyc02g067960.3.1 No alias transcription factor (mTERF) 0.05 Archaeplastida
Solyc02g082010.3.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Solyc04g051880.3.1 No alias transcription factor (mTERF) 0.07 Archaeplastida
Solyc04g072500.1.1 No alias transcription factor (mTERF) 0.11 Archaeplastida
Solyc04g072540.3.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
Zm00001e010589_P001 No alias transcription factor (mTERF) 0.04 Archaeplastida
Zm00001e013884_P001 No alias transcription factor (mTERF) 0.02 Archaeplastida
Zm00001e022322_P001 No alias transcription factor (mTERF) 0.03 Archaeplastida
Zm00001e027097_P001 No alias transcription factor (mTERF) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 438 712
IPR003690 MTERF 158 330
IPR003690 MTERF 56 139
No external refs found!